Interesting Alasdair, when I watched the video I though she was looking a bit tender and was tempted to make a comment but then thought I was being a bit picky and didn’t want to be negative about such a lovely model! So glad you noticed the same, and, as Colin mentioned she looks a bit high so you have plenty to play with.
Whatever weight you add I would add it equally to either end. If you put it in the middle it will lower the hull in the water but only slightly reduce the bobbing effect. If you split the weight and add it to either end the bobbing effect will be much more reduced. I would play around with plastic bags of lead shot to start with. You can buy lead shot on line, not cheap but you’ve always got it. Then simply put small amounts into two small plastic bags and put them in either end of the model. You can then easily add or remove shot from the bags until you get exactly the ballast conditions you are looking for. You can also adjust the trim by having slightly more or less in one bag. Puffers tended to be down by the stern unless fully loaded, when they were fairly level. Label the bags and weigh them for future reference. You could then decide to add some of the ballast permanently by sealing some of the shot in resin and leaving the remainder as removeable for future flexibility with battery changes or equipment additions, or you could add all the shot permanently in resin.
I wouldn’t take it right down to the fully loaded marks, puffers were frequently not fully loaded, especially with less dense cargos, and the model will become unmanageably heavy so have a play and decide what suits the looks, the handling and the weight of the model.
As an example I have a ready built Graupner Corvette which, after a few trials, I decided needed around 6kg of ballast. I played around with lead shot in plastic bags until I decided that 2kg in the stern and 2kg in the bow gave her the right attitude and an appropriate movement through the water. The remaining 2kg are the two lead acid batteries midships.

