Matt, if it is your first model then, as Dave suggests, stick to the original design and build. Once you start trying to change things you introduce all sorts of extra variables which, as you are beginning to realise, can have unexpected consequences and significantly affect the quality of the build and the performance of the model, not always for the better!
For example, if you increase the size of the hull, the internal volume (and displacement/weight) will increase exponentially more than the percentage increase in length. For example a 35ft yacht is much, much bigger than a 30ft one of the same shape.
Colin