Peter, I dont think there are any hard and fast rules about this, it all depends on the boat, or more importantly, the model.
In something like a MTB, balance and access to the bits and bobs is the sort of thing that matters more.
For a start, I would have a session in the bath to determine the best place to put the motors and batteries, assuming you have not already decided ,
The shafts need to be at a fairly shallow angle, which normally means motors more forward than back, and obviously the rudders need to be aft of the props, with sufficient clearance to change the props without having to start dismantling things, and not sticking out the back.
I would have thought the prop and rudder positions as shown on the plan would be a guide to where you should be placing the “real” ones, although you may want to increase the rudder size a bit, only having two, and it is always easier to cut down rudder size rather than increase it, and so the props may have to shift slightly further forward than plan.
Ashley