Bri,
The idea is to put enough resin on to fill the weave and get a smooth surface. Then, as you say, use filler to smooth out any hollows. A suitable filler would be Isopon P38 as it sands easily.
If the hollows are a bit deep then a little more cloth and resin over them to build up the surface will also work as it can be sanded down to blend in with the adjoining areas.
As always at this stage – take your time!
Colin